If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ), 'gf_id' => 'HOM05D000986', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000986' ), 'data_identifier' => 'HOM05D000986', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000986', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '611', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p23770' => 'bna', 'A06p11410' => 'bna', 'A07p18990' => 'bna', 'A08p31610' => 'bna', 'A09p61450' => 'bna', 'Aa31LG4G450' => 'aar', 'Aa31LG7G140' => 'aar', 'Aa31LG8G5270' => 'aar', 'Actinidia00180' => 'ach', 'Actinidia01761' => 'ach', 'Actinidia08807' => 'ach', 'Actinidia15788' => 'ach', 'Actinidia26075' => 'ach', 'Actinidia26400' => 'ach', 'Actinidia39008' => 'ach', 'Ah.01g020770' => 'amhyb', 'Ah.09g225910' => 'amhyb', 'AL1G27480' => 'aly', 'AL2G41360' => 'aly', 'AL4G21600' => 'aly', 'Aqoxy2G00216' => 'aox', 'Aqoxy6G02374' => 'aox', 'Aqoxy7G03726' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3HNX76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5S2G3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79CW3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T2EYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D13Q5Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F7FICR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9J8XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HHPV0P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JGW3SF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KSBN30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R27EBV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VPW5NJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VQ5WWX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZP3NZP' => 'arhy', 'AT1G15380' => 'ath', 'AT1G80160' => 'ath', 'AT2G28420' => 'ath', 'ATR0149G012' => 'atr', 'ATR0499G017' => 'atr', 'ATR1156G049' => 'atr', 'Atru.chr1.3050' => 'acertr', 'Atru.chr11.2542' => 'acertr', 'Atru.chr3.773' => 'acertr', 'Atru.chr6.792' => 'acertr', 'Atru.chr7.1211' => 'acertr', 'AUR62011543' => 'cqu', 'AUR62011987' => 'cqu', 'AUR62016362' => 'cqu', 'AUR62032301' => 'cqu', 'AUR62033483' => 'cqu', 'BcaB03g13064' => 'bca', 'BcaB03g14544' => 'bca', 'BcaB05g25292' => 'bca', 'BcaB06g28213' => 'bca', 'BcaC02g08171' => 'bca', 'BcaC02g08172' => 'bca', 'BcaC03g15997' => 'bca', 'BcaC05g25476' => 'bca', 'BcaC05g25489' => 'bca', 'BcaC07g38784' => 'bca', 'BcaC07g41505' => 'bca', 'BcaNung07073' => 'bca', 'BolC2t09764H' => 'bol', 'BolC4t23790H' => 'bol', 'BolC4t27284H' => 'bol', 'BolC5t30089H' => 'bol', 'BolC8t49343H' => 'bol', 'BolC8t52047H' => 'bol', 'BraA02t07369Z' => 'bra', 'BraA04t17720Z' => 'bra', 'BraA06t24318Z' => 'bra', 'BraA07t29604Z' => 'bra', 'BraA08t35083Z' => 'bra', 'BraA09t41516Z' => 'bra', 'C02p37520' => 'bna', 'C04p22960' => 'bna', 'C05p13520' => 'bna', 'C08p17160' => 'bna', 'C08p45010' => 'bna', 'CAN.G1505.16' => 'can', 'CAN.G2125.3' => 'can', 'CAN.G243.39' => 'can', 'CAN.G377.9' => 'can', 'CAN.G407.101' => 'can', 'CAN.G785.5' => 'can', 'CAN.G798.63' => 'can', 'CAN.G798.64' => 'can', 'CAN.G909.17' => 'can', 'CANSAT01G3120' => 'cansat', 'CANSAT11G1340' => 'cansat', 'CANSAT54G2116' => 'cansat', 'CANSAT80G0072' => 'cansat', 'CARHR015910' => 'chi', 'CARHR074320' => 'chi', 'CARHR121370' => 'chi', 'Carub.0001s1515' => 'cru', 'Carub.0002s2735' => 'cru', 'Carub.0004s0937' => 'cru', 'Carub.0018s0003' => 'cru', 'Carub.0030s0002' => 'cru', 'Ca_20431_v3' => 'car', 'Ca_21692_v3' => 'car', 'Ca_22366_v3' => 'car', 'Ca_24901_v3' => 'car', 'Ca_26318_v3' => 'car', 'CBR_g23810' => 'cbr', 'Cc02_g23060' => 'ccan', 'Cc04_g04160' => 'ccan', 'Cc07_g10480' => 'ccan', 'CDE04G0314' => 'cde', 'CDE06G1473' => 'cde', 'CDE12G0421' => 'cde', 'Cfa001993' => 'cfa', 'Cfa003352' => 'cfa', 'Cfa004496' => 'cfa', 'Cfa006949' => 'cfa', 'Cfa010824' => 'cfa', 'Ciclev10002584m.g' => 'ccl', 'Ciclev10009574m.g' => 'ccl', 'Ciclev10010755m.g' => 'ccl', 'Ciclev10026552m.g' => 'ccl', 'Ciclev10026643m.g' => 'ccl', 'Ciclev10033699m.g' => 'ccl', 'CiPaw.01G245500' => 'cil', 'CiPaw.02G155300' => 'cil', 'CiPaw.03G242500' => 'cil', 'CiPaw.05G005500' => 'cil', 'CiPaw.06G173400' => 'cil', 'CiPaw.07G056500' => 'cil', 'CiPaw.08G135000' => 'cil', 'CiPaw.14G003900' => 'cil', 'ClCG06G010960' => 'cla', 'ClCG09G002790' => 'cla', 'ClCG09G004470' => 'cla', 'COL.COLO4_05776' => 'col', 'COL.COLO4_05777' => 'col', 'COL.COLO4_12329' => 'col', 'COL.COLO4_12920' => 'col', 'COL.COLO4_17734' => 'col', 'COL.COLO4_21955' => 'col', 'Cpa.g.sc10.234' => 'cpa', 'Cpa.g.sc125.57' => 'cpa', 'Cpa.g.sc6.220' => 'cpa', 'Cpa.g.sc75.53' => 'cpa', 'Cre16.g678200' => 'cre', 'CsaV3_1G029840' => 'csa', 'CsaV3_7G030670' => 'csa', 'CsaV3_7G032540' => 'csa', 'CSS0002351' => 'camsi', 'CSS0006178' => 'camsi', 'CSS0008080' => 'camsi', 'CSS0012067' => 'camsi', 'CSS0026099' => 'camsi', 'CSS0045712' => 'camsi', 'CSS0047888' => 'camsi', 'CSS0050036' => 'camsi', 'DCAR_001920' => 'dca', 'DCAR_002132' => 'dca', 'DCAR_005552' => 'dca', 'DCAR_006661' => 'dca', 'DCAR_006676' => 'dca', 'DCAR_009198' => 'dca', 'DCAR_014871' => 'dca', 'DCAR_025493' => 'dca', 'Dinv07426' => 'din', 'Dinv07478' => 'din', 'Dinv30580' => 'din', 'Dinv33606' => 'din', 'Dinv36542' => 'din', 'Dinv38104' => 'din', 'Dinv40064' => 'din', 'Dinv41527' => 'din', 'Duzib052G1041' => 'dzi', 'Duzib132G0099' => 'dzi', 'Duzib138G0876' => 'dzi', 'Duzib147G1549' => 'dzi', 'Duzib150G0941' => 'dzi', 'Duzib168G2368' => 'dzi', 'Duzib187G0501' => 'dzi', 'Duzib192G0013' => 'dzi', 'Duzib235G1307' => 'dzi', 'Duzib264G0479' => 'dzi', 'ECA232G1266' => 'eca', 'ECA234G2599' => 'eca', 'ECA234G2712' => 'eca', 'ECA236G2007' => 'eca', 'ECA236G5083' => 'eca', 'EL10Ac5g10517' => 'bvu', 'EL10Ac8g18622' => 'bvu', 'EL10Ac9g21921' => 'bvu', 'Eucgr.C01137' => 'egr', 'Eucgr.C03639' => 'egr', 'Eucgr.C03913' => 'egr', 'Eucgr.C04184' => 'egr', 'Eucgr.C04185' => 'egr', 'Eucgr.F02538' => 'egr', 'Eucgr.G00342' => 'egr', 'Eucgr.G03282' => 'egr', 'Eucgr.J02400' => 'egr', 'Eucgr.J03055' => 'egr', 'Eucgr.L02833' => 'egr', 'FAN01G2607' => 'fan', 'FAN01G3147' => 'fan', 'FAN02G4176' => 'fan', 'FAN03G1256' => 'fan', 'FAN05G2338' => 'fan', 'FAN06G1695' => 'fan', 'FAN09G0398' => 'fan', 'FAN10G0340' => 'fan', 'FAN14G2374' => 'fan', 'FAN19G0673' => 'fan', 'FAN19G2721' => 'fan', 'FAN21G2220' => 'fan', 'FAN23G0737' => 'fan', 'FAN23G2383' => 'fan', 'FAN26G0909' => 'fan', 'FAN26G3320' => 'fan', 'FAN28G1010' => 'fan', 'FAN28G1972' => 'fan', 'FvH4_1g03551' => 'fve', 'FvH4_1g12090' => 'fve', 'FvH4_6g30160' => 'fve', 'FvH4_7g01840' => 'fve', 'Glyma.01G168400' => 'gma', 'Glyma.07G031700' => 'gma', 'Glyma.08G211100' => 'gma', 'Glyma.11G075000' => 'gma', 'Glyma.12G167400' => 'gma', 'Glyma.13G168200' => 'gma', 'Glyma.15G009500' => 'gma', 'Glyma.16G003500' => 'gma', 'Glyma.17G115900' => 'gma', 'Gohir.A02G112708' => 'ghi', 'Gohir.A02G169300' => 'ghi', 'Gohir.A03G215100' => 'ghi', 'Gohir.A04G052300' => 'ghi', 'Gohir.A05G017600' => 'ghi', 'Gohir.A07G026633' => 'ghi', 'Gohir.A07G130800' => 'ghi', 'Gohir.A08G183700' => 'ghi', 'Gohir.A10G075400' => 'ghi', 'Gohir.A10G097700' => 'ghi', 'Gohir.A11G162925' => 'ghi', 'Gohir.A12G060800' => 'ghi', 'Gohir.A12G100300' => 'ghi', 'Gohir.D02G236600' => 'ghi', 'Gohir.D03G010700' => 'ghi', 'Gohir.D05G018500' => 'ghi', 'Gohir.D09G015866' => 'ghi', 'Gohir.D10G076100' => 'ghi', 'Gohir.D10G090400' => 'ghi', 'Gohir.D12G060900' => 'ghi', 'Gohir.D12G103300' => 'ghi', 'Gohir.D13G078800' => 'ghi', 'Gohir.D13G152316' => 'ghi', 'Gorai.003G011100' => 'gra', 'Gorai.005G265100' => 'gra', 'Gorai.008G064000' => 'gra', 'Gorai.008G112300' => 'gra', 'Gorai.009G018900' => 'gra', 'Gorai.011G081900' => 'gra', 'Gorai.011G099500' => 'gra', 'GSVIVG01001440001' => 'vvi', 'GSVIVG01015508001' => 'vvi', 'GSVIVG01017283001' => 'vvi', 'GSVIVG01017284001' => 'vvi', 'GSVIVG01023260001' => 'vvi', 'HanXRQChr03g0088531' => 'han', 'HanXRQChr03g0088541' => 'han', 'HanXRQChr06g0181361' => 'han', 'HanXRQChr09g0274951' => 'han', 'HanXRQChr12g0361461' => 'han', 'HanXRQChr16g0500471' => 'han', 'HanXRQChr16g0518461' => 'han', 'HanXRQChr16g0518491' => 'han', 'HanXRQChr16g0518501' => 'han', 'HanXRQChr17g0563121' => 'han', 'Haze_03130' => 'cav', 'Haze_03803' => 'cav', 'Haze_10050' => 'cav', 'Haze_16525' => 'cav', 'Haze_25587' => 'cav', 'Hma1.2p1_0018F.1_g012610' => 'hma', 'Hma1.2p1_0042F.1_g025480' => 'hma', 'Hma1.2p1_0266F.1_g106920' => 'hma', 'Hma1.2p1_0515F.1_g170170' => 'hma', 'Hma1.2p1_1108F.1_g257950' => 'hma', 'Hma1.2p1_1324F.1_g275660' => 'hma', 'HPP92_005147' => 'vpl', 'HPP92_005150' => 'vpl', 'HPP92_008651' => 'vpl', 'HPP92_008652' => 'vpl', 'HPP92_028242' => 'vpl', 'Hund00542' => 'sun', 'Hund06572' => 'sun', 'Hund09141' => 'sun', 'Hund31461' => 'sun', 'Lalb_Chr01g0012471' => 'lal', 'Lalb_Chr07g0178851' => 'lal', 'Lalb_Chr14g0373731' => 'lal', 'Lalb_Chr15g0083601' => 'lal', 'Lalb_Chr22g0350951' => 'lal', 'Lalb_Chr24g0395561' => 'lal', 'Lj2A460T76' => 'lonja', 'Lj2g0020210' => 'lja', 'Lj3g0002168' => 'lja', 'Lj3g0010891' => 'lja', 'Lj3g0014520' => 'lja', 'Lj4A215T53' => 'lonja', 'Lj4g0011387' => 'lja', 'Lj4g0026370' => 'lja', 'Lj5C69T15' => 'lonja', 'Lj9A299T36' => 'lonja', 'Lsat_1_v5_gn_4_105781' => 'lsa', 'Lsat_1_v5_gn_4_32020' => 'lsa', 'Lsat_1_v5_gn_5_132120' => 'lsa', 'Lsat_1_v5_gn_7_75940' => 'lsa', 'Lsat_1_v5_gn_7_75960' => 'lsa', 'Lsat_1_v5_gn_7_76640' => 'lsa', 'Manes.01G143500' => 'mes', 'Manes.02G101800' => 'mes', 'Manes.04G115700' => 'mes', 'Manes.07G011800' => 'mes', 'Manes.07G023300' => 'mes', 'Manes.10G119000' => 'mes', 'Manes.11G054100' => 'mes', 'Manes.14G130900' => 'mes', 'Mapoly0022s0133' => 'mpo', 'Mapoly0031s0135' => 'mpo', 'Mapoly0140s0028' => 'mpo', 'MBI01_g37811_MAGBIO' => 'mbi', 'MBI04_g07639_MAGBIO' => 'mbi', 'MBI05_g22718_MAGBIO' => 'mbi', 'MBI05_g41086_MAGBIO' => 'mbi', 'MBI05_g47435_MAGBIO' => 'mbi', 'MD00G1106800' => 'mdo', 'MD02G1110500' => 'mdo', 'MD02G1300100' => 'mdo', 'MD07G1024800' => 'mdo', 'MD08G1241000' => 'mdo', 'MD15G1248200' => 'mdo', 'MD17G1207700' => 'mdo', 'Medtr0003s0630' => 'mtr', 'Medtr1g115170' => 'mtr', 'Medtr2g005880' => 'mtr', 'Medtr2g103460' => 'mtr', 'Medtr2g103490' => 'mtr', 'Medtr4g011020' => 'mtr', 'Medtr4g114080' => 'mtr', 'Medtr5g021610' => 'mtr', 'Medtr8g076160' => 'mtr', 'MELO3C023408.2' => 'cme', 'MELO3C023589.2' => 'cme', 'MELO3C026649.2' => 'cme', 'Migut.B00781' => 'egut', 'Migut.I00792' => 'egut', 'Migut.N01804' => 'egut', 'MSTRG.11125' => 'ama', 'MSTRG.20319' => 'ama', 'MSTRG.22730' => 'ama', 'Nitab4.5_0000667g0110' => 'nta', 'Nitab4.5_0000787g0200' => 'nta', 'Nitab4.5_0000787g0230' => 'nta', 'Nitab4.5_0000787g0270' => 'nta', 'Nitab4.5_0001764g0070' => 'nta', 'Nitab4.5_0001912g0020' => 'nta', 'Nitab4.5_0002591g0050' => 'nta', 'Nitab4.5_0002888g0020' => 'nta', 'Nitab4.5_0003722g0030' => 'nta', 'Nitab4.5_0003731g0050' => 'nta', 'Nitab4.5_0004106g0010' => 'nta', 'Nitab4.5_0005415g0010' => 'nta', 'Nitab4.5_0005814g0010' => 'nta', 'Nitab4.5_0006440g0030' => 'nta', 'Nitab4.5_0006695g0050' => 'nta', 'Nitab4.5_0007295g0010' => 'nta', 'Nitab4.5_0007295g0030' => 'nta', 'Nitab4.5_0009643g0050' => 'nta', 'Nitab4.5_0010254g0020' => 'nta', 'Nitab4.5_0010819g0040' => 'nta', 'Nitab4.5_0012096g0010' => 'nta', 'Nitab4.5_0012660g0020' => 'nta', 'Nn1g04825' => 'nnu', 'Nn1g08481' => 'nnu', 'Nn2g11998' => 'nnu', 'Nn2g14412' => 'nnu', 'Nn5g27843' => 'nnu', 'Nn5g29229' => 'nnu', 'Nn5g29232' => 'nnu', 'Nn5g29233' => 'nnu', 'Nn6g32248' => 'nnu', 'Nn6g32251' => 'nnu', 'Nn7g36347' => 'nnu', 'Nn8g39408' => 'nnu', 'Oeu033468.1' => 'oeu', 'Oeu033469.1' => 'oeu', 'Oeu035481.1' => 'oeu', 'Oeu045926.1' => 'oeu', 'Oeu045931.1' => 'oeu', 'Oeu045932.1' => 'oeu', 'Oeu049814.2' => 'oeu', 'Oeu051419.1' => 'oeu', 'Oeu052270.1' => 'oeu', 'Os01g0173600' => 'osa', 'Os04g0538900' => 'osa', 'Os05g0171900' => 'osa', 'Os07g0657100' => 'osa', 'Peaxi162Scf00002g02412' => 'pax', 'Peaxi162Scf00010g00512' => 'pax', 'Peaxi162Scf00011g01126' => 'pax', 'Peaxi162Scf00011g01219' => 'pax', 'Peaxi162Scf00034g00141' => 'pax', 'Peaxi162Scf00083g01118' => 'pax', 'Peaxi162Scf00152g01526' => 'pax', 'Peaxi162Scf00332g00749' => 'pax', 'Peaxi162Scf00984g00116' => 'pax', 'Peaxi162Scf01108g00329' => 'pax', 'PGR031G0383' => 'pgr', 'PGR042G1515' => 'pgr', 'PGR102G2403' => 'pgr', 'PGR102G3272' => 'pgr', 'PGR119G1049' => 'pgr', 'PGR119G1911' => 'pgr', 'PGR119G2330' => 'pgr', 'PGR142G0875' => 'pgr', 'PGR142G1246' => 'pgr', 'PGR142G3301' => 'pgr', 'PGR142G3588' => 'pgr', 'PGSC0003DMG400000631' => 'stu', 'PGSC0003DMG400003626' => 'stu', 'PGSC0003DMG400006834' => 'stu', 'PGSC0003DMG400022535' => 'stu', 'PGSC0003DMG400024895' => 'stu', 'PGSC0003DMG400024920' => 'stu', 'PGSC0003DMG400028644' => 'stu', 'Phvul.002G111300' => 'pvu', 'Phvul.003G163400' => 'pvu', 'Phvul.005G176100' => 'pvu', 'Phvul.006G218600' => 'pvu', 'Phvul.010G154400' => 'pvu', 'Potri.001G171600' => 'ptr', 'Potri.003G009000' => 'ptr', 'Potri.003G062400' => 'ptr', 'Potri.004G223300' => 'ptr', 'Potri.005G117000' => 'ptr', 'Potri.007G015100' => 'ptr', 'Potri.007G129200' => 'ptr', 'Potri.009G055500' => 'ptr', 'Pp3c10_14120' => 'ppa', 'Pp3c24_16550' => 'ppa', 'Pp3c8_15470' => 'ppa', 'Prupe.1G577800' => 'ppe', 'Prupe.2G024500' => 'ppe', 'Prupe.3G082100' => 'ppe', 'Prupe.7G165900' => 'ppe', 'Prupe.7G240200' => 'ppe', 'Prupe.7G241600' => 'ppe', 'Prupe.8G193600' => 'ppe', 'Psat1g143320' => 'psa', 'Psat1g223240' => 'psa', 'Psat2g155800' => 'psa', 'Psat4g039360' => 'psa', 'Psat4g097680' => 'psa', 'Psat4g097760' => 'psa', 'Psat5g301520' => 'psa', 'Psat5g303640' => 'psa', 'Psat7g256080' => 'psa', 'PSO017G1349' => 'pso', 'PSO063G3725' => 'pso', 'PSO135G0164' => 'pso', 'PSO170G0826' => 'pso', 'PSO170G3046' => 'pso', 'PSO384G4291' => 'pso', 'PSO455G0033' => 'pso', 'PSO541G0033' => 'pso', 'PSO541G1126' => 'pso', 'PSO541G2049' => 'pso', 'PSO541G3486' => 'pso', 'PSO541G4335' => 'pso', 'PSO541G5560' => 'pso', 'PSO541G5946' => 'pso', 'PSO675G0312' => 'pso', 'PSO675G1552' => 'pso', 'PSO675G1847' => 'pso', 'PSO675G2627' => 'pso', 'PSO675G3121' => 'pso', 'PSO675G8936' => 'pso', 'QL02p087882' => 'qlo', 'QL02p100270' => 'qlo', 'QL04p010481' => 'qlo', 'QL05p028245' => 'qlo', 'QL06p033888' => 'qlo', 'RcHm_v2.0_Chr1g0318471' => 'rch', 'RcHm_v2.0_Chr2g0089061' => 'rch', 'RcHm_v2.0_Chr2g0099751' => 'rch', 'RcHm_v2.0_Chr2g0136381' => 'rch', 'RcHm_v2.0_Chr3g0458691' => 'rch', 'Rhsim03G0241800' => 'rsi', 'Rhsim03G0247000' => 'rsi', 'Rhsim08G0034900' => 'rsi', 'Rhsim08G0215200' => 'rsi', 'Rhsim12G0192400' => 'rsi', 'Sabra01G0139900' => 'sbr', 'Sabra01G0169200' => 'sbr', 'Sabra03G0004600' => 'sbr', 'Sabra03G0036300' => 'sbr', 'Sabra05G0095800' => 'sbr', 'Sabra07G0012200' => 'sbr', 'Sabra09G0040600' => 'sbr', 'SalBow2G2734' => 'sbo', 'SalBow2G3637' => 'sbo', 'Sc09g0006830' => 'sci', 'Sc10g0007000' => 'sci', 'Sc14g0004960' => 'sci', 'Sed0010287' => 'sed', 'Sed0020072' => 'sed', 'Sed0024566' => 'sed', 'Sed0025813' => 'sed', 'SEGI_02181' => 'sgi', 'SEGI_13344' => 'sgi', 'SEGI_15187' => 'sgi', 'SEGI_17522' => 'sgi', 'SEGI_18092' => 'sgi', 'SEGI_20910' => 'sgi', 'SEGI_26463' => 'sgi', 'SEGI_26464' => 'sgi', 'SEGI_30711' => 'sgi', 'SEGI_31393' => 'sgi', 'SEGI_36129' => 'sgi', 'SEGI_36450' => 'sgi', 'SEGI_39091' => 'sgi', 'SGA_v2.0_scaffold272G46378' => 'sas', 'SGA_v2.0_scaffold42G15907' => 'sas', 'SGA_v2.0_scaffold5G02671' => 'sas', 'SGA_v2.0_scaffold5G02948' => 'sas', 'SMO114G0101' => 'smo', 'SMO343G0149' => 'smo', 'Solyc01g088010.1' => 'sly', 'Solyc01g103590.4' => 'sly', 'Solyc01g103630.4' => 'sly', 'Solyc02g084410.3' => 'sly', 'Solyc03g116530.3' => 'sly', 'Solyc12g006640.2' => 'sly', 'Solyc12g042840.2' => 'sly', 'Sopen01g045950' => 'spe', 'Sopen01g046040' => 'spe', 'Sopen02g029120' => 'spe', 'Sopen03g035420' => 'spe', 'Sopen12g002590' => 'spe', 'Sopen12g022000' => 'spe', 'Sp1g13710' => 'spa', 'Sp4g11240' => 'spa', 'Sp5g35640' => 'spa', 'TAR090G0002' => 'tar', 'TAR376G0663' => 'tar', 'TAR376G1094' => 'tar', 'TAR625G0586' => 'tar', 'TAR626G0191' => 'tar', 'TAR628G1046' => 'tar', 'TAR628G1555' => 'tar', 'TAR636G1666' => 'tar', 'THA.LOC104808228' => 'tha', 'THA.LOC104818034' => 'tha', 'Thecc.01G022400' => 'tca', 'Thecc.01G404300' => 'tca', 'Thecc.02G019600' => 'tca', 'Thecc.06G069900' => 'tca', 'Thecc.09G123700' => 'tca', 'Thhalv10008912m.g' => 'esa', 'Thhalv10017750m.g' => 'esa', 'Thhalv10019227m.g' => 'esa', 'TPR.G10685' => 'tpr', 'TPR.G2138' => 'tpr', 'TPR.G2144' => 'tpr', 'TPR.G2382' => 'tpr', 'TPR.G27506' => 'tpr', 'TPR.G30066' => 'tpr', 'TPR.G32184' => 'tpr', 'TPR.G38668' => 'tpr', 'TWI09G1595' => 'twi', 'TWI12G0150' => 'twi', 'TWI14G0754' => 'twi', 'TWI53G2005' => 'twi', 'TWI63G1245' => 'twi', 'TWI73G0648' => 'twi', 'TWI75G0022' => 'twi', 'unitig_0.g1121' => 'ugi', 'unitig_61.g26246' => 'ugi', 'unitig_62.g23601' => 'ugi', 'vmacro06120' => 'vma', 'vmacro06179' => 'vma', 'vmacro06180' => 'vma', 'vmacro16908' => 'vma', 'vmacro18975' => 'vma', 'vmacro22083' => 'vma', 'vmacro23493' => 'vma', 'VMungo0251G0093' => 'vmu', 'VMungo0331G1003' => 'vmu', 'VMungo0540G0171' => 'vmu', 'VMungo0540G0451' => 'vmu', 'VMungo1080G1293' => 'vmu', 'VMungo1127G0156' => 'vmu', 'VMungo1127G0751' => 'vmu', 'VMungo1215G0957' => 'vmu', 'VMungo1215G1040' => 'vmu', 'Zm00001eb122760' => 'zma', 'Zm00001eb283120' => 'zma', 'Zm00001eb345750' => 'zma' ) $gf_id = 'HOM05D000986' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000986' ) $data_identifier = 'HOM05D000986' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 3, 'aox' => (int) 3, 'arhy' => (int) 14, 'ath' => (int) 3, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 12, 'bol' => (int) 6, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 3, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 11, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 9, 'ghi' => (int) 23, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 4, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 8, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 22, 'nnu' => (int) 12, 'oeu' => (int) 9, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 11, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 8, 'ppa' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 2, 'sci' => (int) 3, 'sed' => (int) 4, 'sgi' => (int) 13, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 2, 'tca' => (int) 5, 'esa' => (int) 3, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 3, 'vma' => (int) 7, 'vmu' => (int) 9, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb345750' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1